PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486037.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 487aa    MW: 51622.4 Da    PI: 8.3885
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486037.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.8e-125075227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG+C +G+rC+F+H++
  XP_004486037.1 50 DEVDCTYYLRTGFCGFGSRCRFNHPR 75
                    6789********************96 PP

2zf-CCCH34.43.8e-1197121327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rt  Ck+G++Ck++H++
  XP_004486037.1  97 QPVCQYYMRTRSCKFGASCKYHHPR 121
                     689********************96 PP

3zf-CCCH39.11.2e-12142166226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++fa+tG+Ck+G++CkF H+
  XP_004486037.1 142 GEKECSYFAKTGQCKFGATCKFDHP 166
                     7899********************9 PP

4zf-CCCH29.99.7e-10355378326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++C ++ + G Ck+G++CkF H+
  XP_004486037.1 355 AAPCTHYTQRGVCKFGPTCKFDHP 378
                     589********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6524876IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-65076IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-95075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003560.001194121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.44694122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-597122IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-997121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-499121IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511140168IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10142166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5142168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4146165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605352380IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5352379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5355379IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7355378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5357377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDHYPRSTEP SRSDPSPEWT GPDPQTGLEE PMWQLGLNGA AEDSYPQRPD EVDCTYYLRT  60
GFCGFGSRCR FNHPRDRGTV IGAASRTVGD YPERAGQPVC QYYMRTRSCK FGASCKYHHP  120
RQTGGTASPV SLNYYGYPLR PGEKECSYFA KTGQCKFGAT CKFDHPVSAG VQIPAPSPGP  180
PVSPLHVPVP SPLYPTVQTP SGPSSQQIGV LVARPSLLQG SFVQSPYGPV VLSPTMVPFS  240
GWGPYQATAT SPVLPSSAPA NVGSPQLYGI TQLPSTANAY TGPYQPSGSS VGPSSRSQKE  300
HSFAARPNQP EYHYYSRTDE LPFSPSYRYH QPPDMSAPKV NVALSPAGLP LRPGAAPCTH  360
YTQRGVCKFG PTCKFDHPIV SLSYSPSASS LTDVPVAPYF VGSSVGTLAP PSSSSELQPE  420
LTTGSSKESV PSRISSSAST TTGSVGLTLS TGGPVSQSST RSRSSSPLAA VNTTTSSNVS  480
HTSSSEM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2053911e-111AC205391.2 Medicago truncatula chromosome 2 BAC clone mth2-38p15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486037.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-140C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLG7IPY90.0G7IPY9_MEDTR; Uncharacterized protein
STRINGGLYMA15G10230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-119C3H family protein